| MirGeneDB ID | Gmo-Novel-10 |
|---|
| Family name |
GMO-NOVEL-10 (all species) |
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| Seed |
CCAUGUG |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
G. morhua
|
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| Node of Origin (family) |
G. morhua
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_4339: 27172-27228 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GAGGUUCUCCAGCUUAAUCGCUGUGCUUUCAUGUCCUAAGAACGCGUGGGCUGGUGUGGGCUGAAUCCAUGUGGUUUUAGGACACGAAGCACACCGUUCUCGCAGAGAAUCUCUGCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAGGUUCUCCAGCUUAAU---| C CA A CUGGUGU
CG UGUGCUUU UGUCCUAAGA CGCGUGGG \
GC ACACGAAG ACAGGAUUUU GUGUACCU G
ACGUCUCUAAGAGACGCUCUU^ C C- G AAGUCGG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Gmo-Novel-10_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AUGUCCUAAGAACGCGUGGGCU -22
Get sequence
|
|---|
| Mature sequence |
Gmo-Novel-10_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UCCAUGUGGUUUUAGGACACGA -57
Get sequence
|
|---|
