| MirGeneDB ID | Gmo-Novel-2 |
|---|
| Family name |
GMO-NOVEL-2 (all species) |
|---|
| Seed |
GCACUGC |
|---|
| Species |
Cod (Gadus morhua) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
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| Orthologues |
|
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| Node of Origin (locus) |
G. morhua
|
|---|
| Node of Origin (family) |
G. morhua
|
|---|
Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_3708: 172174-172231 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GCAUAUUUUACGAUUUAUAAUGUUUUAACAUGCACUGCAUAUACUUUUGAAAGAAAUGUAUUUACUUUCAAUGUAUAUGCAGUGCUUGUUAAAACAUUGCUUAUUGUUUGCAUAUGUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCAUAUUUUACGAUUUA--| U UU AAAUG
UAAUGUUUUAACA GCACUGCAUAUAC UUGAAAG \
GUUACAAAAUUGU CGUGACGUAUAUG AACUUUC U
AUGUAUACGUUUGUUAUUC^ U U- AUUUA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Gmo-Novel-2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGCACUGCAUAUACUUUUGAAAG -23
Get sequence
|
|---|
| Star sequence |
Gmo-Novel-2_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- UUCAAUGUAUAUGCAGUGCUUG -58
Get sequence
|
|---|
