| MirGeneDB ID | Gmo-Novel-5 |
|---|
| Family name |
GMO-NOVEL-5 (all species) |
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| Seed |
AGGACAU |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
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| Node of Origin (locus) |
G. morhua
|
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| Node of Origin (family) |
G. morhua
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
contig186083: 219-281 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
ACAAAGAAAGCAUGACUAUAACACACUGAGAAGGACAUUAUUUAUUGAUAAUUUAUAUAUAUAUAUAAAUUAUCGUAAAUAAUUUGUCCUUCUCAGUGUGUAUGUACCCCAUCACGCGUGCAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
ACAAAGAAAGCAUGACUAUA-- --| U UUAUAUA
ACACACUGAGAAGGACA UUAUUUAU GAUAAU U
UGUGUGACUCUUCCUGU AAUAAAUG CUAUUA A
UACGUGCGCACUACCCCAUGUA UU^ - AAUAUAU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Gmo-Novel-5_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AAGGACAUUAUUUAUUGAUAAU -22
Get sequence
|
|---|
| Star sequence |
Gmo-Novel-5_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- UAUCGUAAAUAAUUUGUCCUUCU -63
Get sequence
|
|---|
