| MirGeneDB ID | Gmo-Novel-7 |
|---|
| Family name |
GMO-NOVEL-7 (all species) |
|---|
| Seed |
ACUGAAC |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
|
|---|
| Paralogues |
|
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| Orthologues |
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| Node of Origin (locus) |
G. morhua
|
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| Node of Origin (family) |
G. morhua
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_125: 173638-173702 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UUCUUUAUUGGGGACUUAUCCCUGGCAGCAAGAGACAGUACAGUUCAGUGAGUGUAAAGUCCAACACAACCCUCACUGAACUUUACCGUCUCUUUCUGCUAUGGGAUGAUGUUUUUUACCUUCUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUCUUUAUUGGGGACUU- -| C A C UGUAAAGUC
AUCCC UGGCAG AAGAGAC GUA AGUUCAGUGAG \
UAGGG AUCGUC UUCUCUG CAU UCAAGUCACUC C
UUCUUCCAUUUUUUGUAG U^ U C U CCAACACAA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Gmo-Novel-7_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGAGACAGUACAGUUCAGUGAG -22
Get sequence
|
|---|
| Mature sequence |
Gmo-Novel-7_3p |
| mirBase accession | None |
|---|
| Sequence |
43- CACUGAACUUUACCGUCUCUUU -65
Get sequence
|
|---|
