MirGeneDB 2.1

MirGeneDB ID

Gmo-Novel-9

Family name GMO-NOVEL-9 (all species)
Seed AGAAUUC
Species Cod (Gadus morhua)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) G. morhua
Node of Origin (family) G. morhua
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_2326: 272579-272640 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGUGUUCUGAGUUUUGAAUCAUAAUUCUGAGAUUGAAUUCAUAAUUCUGAGAUGAAAUUAUCUAAAUCUCAGAAUUCUGACUUUAUUCUCAGAAUUCUGACUCUAUUCGCAGAAUCAGAAA
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Structure
        10          20        30        40        50        60
UUGUGUUCUGAGUUUUGAA--|  U          U    U   U         AUGAAAU 
                     UCA AAUUCUGAGA UGAA UCA AAUUCUGAG       U
                     AGU UUAAGACUCU AUUU AGU UUAAGACUC       A
AAAGACUAAGACGCUUAUCUC^  C          U    C   C         UAAAUCU 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Novel-9_5p*

mirBase accessionNone
Sequence
0- AGAUUGAAUUCAUAAUUCUGAG -22
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Mature sequence

Gmo-Novel-9_3p

mirBase accessionNone
Sequence
40- CAGAAUUCUGACUUUAUUCUCA -62
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