| MirGeneDB ID | Gmo-Novel-9 |
|---|
| Family name |
GMO-NOVEL-9 (all species) |
|---|
| Seed |
AGAAUUC |
|---|
| Species |
Cod (Gadus morhua) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
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| Orthologues |
|
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| Node of Origin (locus) |
G. morhua
|
|---|
| Node of Origin (family) |
G. morhua
|
|---|
Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_2326: 272579-272640 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUGUGUUCUGAGUUUUGAAUCAUAAUUCUGAGAUUGAAUUCAUAAUUCUGAGAUGAAAUUAUCUAAAUCUCAGAAUUCUGACUUUAUUCUCAGAAUUCUGACUCUAUUCGCAGAAUCAGAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUGUGUUCUGAGUUUUGAA--| U U U U AUGAAAU
UCA AAUUCUGAGA UGAA UCA AAUUCUGAG U
AGU UUAAGACUCU AUUU AGU UUAAGACUC A
AAAGACUAAGACGCUUAUCUC^ C U C C UAAAUCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Gmo-Novel-9_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGAUUGAAUUCAUAAUUCUGAG -22
Get sequence
|
|---|
| Mature sequence |
Gmo-Novel-9_3p |
| mirBase accession | None |
|---|
| Sequence |
40- CAGAAUUCUGACUUUAUUCUCA -62
Get sequence
|
|---|
