| MirGeneDB ID | Gpa-Novel-2 |
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| Family name |
GPA-NOVEL-2 (all species) |
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| Seed |
AAUGCCC |
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| Species |
Tsetse fly (Glossina pallidipes) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
G. pallidipes
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| Node of Origin (family) |
G. pallidipes
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Genome context
(GpalI1) |
Scaffold29: 988131-988195 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AACAAGUUCAACAUGUUUCUUGCGCUAAAUUGAAAUUUUUAAGCGGCACUAACUCGCAACAUAACUGAUUUGAUAAUGCCCUUAGAAAUUUCAAAUAAUGGCACUAUACAGCGUGCGUAUGCAAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AACAAGUUCAACAUGUUUCUUGC AA--| C C ACUCGCAACA
GCUA UUGAAAUUUUUAAG GGCA UA U
CGGU AACUUUAAAGAUUC CCGU AU A
AAACGUAUGCGUGCGACAUAUCA AAUA^ - A AGUUUAGUCA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
Gl |
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| Star sequence |
Gpa-Novel-2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGAAAUUUUUAAGCGGCACUAAC -23
Get sequence
|
|---|
| Mature sequence |
Gpa-Novel-2_3p |
| mirBase accession | None |
|---|
| Sequence |
43- UAAUGCCCUUAGAAAUUUCAAA -65
Get sequence
|
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