MirGeneDB ID | Gpa-Novel-2 |
Family name |
GPA-NOVEL-2 (all species) |
Seed |
AAUGCCC |
Species |
Tsetse fly (Glossina pallidipes) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
G. pallidipes
|
Node of Origin (family) |
G. pallidipes
|
Genome context (GpalI1) |
Scaffold29: 988131-988195 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AACAAGUUCAACAUGUUUCUUGCGCUAAAUUGAAAUUUUUAAGCGGCACUAACUCGCAACAUAACUGAUUUGAUAAUGCCCUUAGAAAUUUCAAAUAAUGGCACUAUACAGCGUGCGUAUGCAAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AACAAGUUCAACAUGUUUCUUGC AA--| C C ACUCGCAACA
GCUA UUGAAAUUUUUAAG GGCA UA U
CGGU AACUUUAAAGAUUC CCGU AU A
AAACGUAUGCGUGCGACAUAUCA AAUA^ - A AGUUUAGUCA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Gpa-Novel-2_5p* |
mirBase accession | None |
Sequence |
0- UGAAAUUUUUAAGCGGCACUAAC -23
Get sequence
|
Mature sequence |
Gpa-Novel-2_3p |
mirBase accession | None |
Sequence |
43- UAAUGCCCUUAGAAAUUUCAAA -65
Get sequence
|