MirGeneDB 3.0

MirGeneDB ID

Gpa-Novel-2

Family name GPA-NOVEL-2 (all species)
Seed AAUGCCC
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) G. pallidipes
Node of Origin (family) G. pallidipes
Genome context
(GpalI1)
Scaffold29: 988131-988195 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AACAAGUUCAACAUGUUUCUUGCGCUAAAUUGAAAUUUUUAAGCGGCACUAACUCGCAACAUAACUGAUUUGAUAAUGCCCUUAGAAAUUUCAAAUAAUGGCACUAUACAGCGUGCGUAUGCAAA
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Structure
        10        20          30        40        50        60  
AACAAGUUCAACAUGUUUCUUGC    AA--|             C    C  ACUCGCAACA 
                       GCUA    UUGAAAUUUUUAAG GGCA UA          U
                       CGGU    AACUUUAAAGAUUC CCGU AU          A
AAACGUAUGCGUGCGACAUAUCA    AAUA^             -    A  AGUUUAGUCA 
   120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
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Star sequence

Gpa-Novel-2_5p*

mirBase accessionNone
Sequence
0- UGAAAUUUUUAAGCGGCACUAAC -23
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Mature sequence

Gpa-Novel-2_3p

mirBase accessionNone
Sequence
43- UAAUGCCCUUAGAAAUUUCAAA -65
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