| MirGeneDB ID | Gpa-Novel-3 |
|---|
| Family name |
GPA-NOVEL-3 (all species) |
|---|
| Seed |
GAUCUUC |
|---|
| Species |
Tsetse fly (Glossina pallidipes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
G. pallidipes
|
|---|
| Node of Origin (family) |
G. pallidipes
|
|---|
Genome context
(GpalI1) |
Scaffold55: 42450-42510 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGGCGAAAAAUUGAAAAUUUUCCUUCUUAACGAUCUUCAAAAUGAAUUUUCGUAGAUUUUAACUAUCGGAAAAUUCAUUUUGAAUAUUGUUAAGCGUGAAAAACUAAACAACUACAACGGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGGCGAAAAAUUGAAAA--| CUU C GUAGAUUU
UUUUC CUUAACGAU UUCAAAAUGAAUUUUC \
AAAAG GAAUUGUUA AAGUUUUACUUAAAAG U
AGGCAACAUCAACAAAUCA^ UGC U GCUAUCAA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
To |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Gpa-Novel-3_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CGAUCUUCAAAAUGAAUUUUCG -22
Get sequence
|
|---|
| Co-mature sequence |
Gpa-Novel-3_3p |
| mirBase accession | None |
|---|
| Sequence |
39- AAAAUUCAUUUUGAAUAUUGUU -61
Get sequence
|
|---|
