MirGeneDB 3.0

MirGeneDB ID

Gsa-Mir-9395

Family name MIR-9395 (all species)
Seed UCUUGAU
Species Russian doll killer (Gyrodactylus salaris)
MiRBase ID gsa-mir-9395
Paralogues
Orthologues
Node of Origin (locus) G. salaris
Node of Origin (family) G. salaris
Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)
scf7180006952959: 457-517 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGUAAAUAUUUGUCUCGCUCGAUUAGAAAUUCUUGAUCUUGCGAGUGAUUCCGAUGAAUAAGACAUGAAUCAUUCUCUAGAUCUGGACUGCUCUUUUAGCUUUCUCGACCACCAUCCUCA
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Structure
        10           20        30        40        50          
UUGUAAAUAUUUGUCUC---|  C  UU  AAAU   U     UGC         CGAUGAA 
                    GCU GA  AG    UCU GAUCU   GAGUGAUUC       \
                    CGA UU  UC    AGG CUAGA   CUUACUAAG       U
ACUCCUACCACCAGCUCUUU^  U  UC  GUC-   U     UCU         UACAGAA 
 .       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Gsa-Mir-9395_5p

mirBase accessionMIMAT0035336
Sequence
0- UUCUUGAUCUUGCGAGUGAUUC -22
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Star sequence

Gsa-Mir-9395_3p*

mirBase accessionMIMAT0035337
Sequence
39- AUCAUUCUCUAGAUCUGGACUG -61
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