| MirGeneDB ID | Gsa-Mir-9397 |
|---|
| Family name |
MIR-9397 (all species) |
|---|
| Seed |
GAUGUAU |
|---|
| Species |
Russian doll killer (Gyrodactylus salaris) |
|---|
| MiRBase ID |
gsa-mir-9397
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
G. salaris
|
|---|
| Node of Origin (family) |
G. salaris
|
|---|
Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic) |
scf7180006950538: 29715-29789 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUUAAAGAAAAAUUUAAAACGUGGACUCGGAGAUGUAUUCUUGGCACGAGAACCCAACAAUCGACUCUCUAUCGAUUUCAAAUCUCGGCUAAAAUUGCAUCGCUUUGUCACGCUUUGACCUUCCAGAUUUGAGAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUUAAAGAAAAAUUUAAAAC-- -| UC A UUC A ACCCAACAAUCGACU
GUG GAC GG GAUGUA UUGGC CGAGA \
CGC CUG UC CUACGU AAUCG GCUCU C
CAGAGUUUAGACCUUCCAGUUU A^ UU G UAA - AAACUUUAGCUAUCU
130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Gsa-Mir-9397_5p |
| mirBase accession | MIMAT0035340 |
|---|
| Sequence |
0- AGAUGUAUUCUUGGCACGAGAAC -23
Get sequence
|
|---|
| Co-mature sequence |
Gsa-Mir-9397_3p |
| mirBase accession | MIMAT0035341 |
|---|
| Sequence |
52- UCUCGGCUAAAAUUGCAUCGCUU -75
Get sequence
|
|---|
