| MirGeneDB ID | Gsa-Novel-1 |
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| Family name |
GSA-NOVEL-1 (all species) |
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| Seed |
AAGAUGG |
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| Species |
Russian doll killer (Gyrodactylus salaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
G. salaris
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| Node of Origin (family) |
G. salaris
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Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic) |
scf7180006950188: 19757-19956 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGAGUUCUUCAGAAAUACUGAUCUAUCAUUGAAGAUGGAAUAAAGGGACUCCAAAUCGACGGAAUAGUAAUAAUUGUAACAAUGGGGGUUUUGACAAUACGAUUGGUUGGAUCAUUCCCUUCUUCAGUUGUCUUUGAGAAGGUUGAAAGUCAGAGGGAGAUUUAUCCAAACAUCAAAAGCCCCCAUUGUUAUUAUUCCAACGAUUGGGAUUCACUUGUUUCCAUCUCGAAUGGUGUUCAAAGAAACUUCCCUAUUGUACA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60 70 80 90 100 110 120
UGAGUUCUUCAGAAAUAC---| UC GA UA - CU CAAAUCGACGGAAUAGUAAUAAUUGUAACAAUGGGGGUUUUGACAAUACGAUUGGUUGGAUCAUUCCCUUCUUCAGU
UGA UAUCAUU AGAUGGAA AAG GGA C \
ACU GUGGUAA UCUACCUU UUC CUU G U
ACAUGUUAUCCCUUCAAAGAA^ U- GC UG A AG GUUAGCAACCUUAUUAUUGUUACCCCCGAAAACUACAAACCUAUUUAGAGGGAGACUGAAAGUUGGAAGAGUUUCUG
. 250 240 230 220 210 200 190 180 170 160 150 140 130 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Gsa-Novel-1_5p |
| mirBase accession | None |
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| Sequence |
0- GAAGAUGGAAUAAAGGGACUC -21
Get sequence
|
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| Star sequence |
Gsa-Novel-1_3p* |
| mirBase accession | None |
|---|
| Sequence |
179- UUCACUUGUUUCCAUCUCGAA -200
Get sequence
|
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