MirGeneDB 3.0
MirGeneDB ID

Gsa-Novel-1

Family name GSA-NOVEL-1 (all species)
Seed AAGAUGG
Species Russian doll killer (Gyrodactylus salaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) G. salaris
Node of Origin (family) G. salaris
Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)		 scf7180006950188: 19757-19956 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAGUUCUUCAGAAAUACUGAUCUAUCAUUGAAGAUGGAAUAAAGGGACUCCAAAUCGACGGAAUAGUAAUAAUUGUAACAAUGGGGGUUUUGACAAUACGAUUGGUUGGAUCAUUCCCUUCUUCAGUUGUCUUUGAGAAGGUUGAAAGUCAGAGGGAGAUUUAUCCAAACAUCAAAAGCCCCCAUUGUUAUUAUUCCAACGAUUGGGAUUCACUUGUUUCCAUCUCGAAUGGUGUUCAAAGAAACUUCCCUAUUGUACA
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Structure
        10           20        30        40         50        60        70        80        90       100       110       120         
UGAGUUCUUCAGAAAUAC---|  UC       GA        UA   -   CU CAAAUCGACGGAAUAGUAAUAAUUGUAACAAUGGGGGUUUUGACAAUACGAUUGGUUGGAUCAUUCCCUUCUUCAGU 
                     UGA  UAUCAUU  AGAUGGAA  AAG GGA  C                                                                             \
                     ACU  GUGGUAA  UCUACCUU  UUC CUU  G                                                                             U
ACAUGUUAUCCCUUCAAAGAA^  U-       GC        UG   A   AG GUUAGCAACCUUAUUAUUGUUACCCCCGAAAACUACAAACCUAUUUAGAGGGAGACUGAAAGUUGGAAGAGUUUCUG 
.       250       240        230       220       210       200       190       180       170       160       150       140       130
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Gsa-Novel-1_5p
mirBase accessionNone
Sequence 
0- GAAGAUGGAAUAAAGGGACUC -21
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Star sequence

Gsa-Novel-1_3p*
mirBase accessionNone
Sequence 
179- UUCACUUGUUUCCAUCUCGAA -200
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