MirGeneDB 2.1

MirGeneDB ID

Isc-Mir-5315

Family name MIR-5315 (all species)
Seed ACACAAC
Species Deer tick (Ixodes scapularis)
MiRBase ID isc-mir-5315
Paralogues
Orthologues
Node of Origin (locus) I. scapularis
Node of Origin (family) I. scapularis
Genome context
(IscaWI)
DS734036: 1283508-1283566 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GAACGACACGGGAACUCGGGUGCGAGGGUGAACACAACAUCCGGACAAGCACGUGCGCGUUUCAUGUUCUUGCCCCGAAGUUGUCUCCGCCUUCAAAACCCGCAAGCUACGCGGACGGA
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Structure
        10         20         30        40        50         
GAACGACACGGGAACUC-    GC-|      AAC     A  C  A    C  GUGCGC 
                  GGGU   GAGGGUG   ACAAC UC GG CAAG AC      \
                  CCCA   CUUCCGC   UGUUG AG CC GUUC UG      G
AGGCAGGCGCAUCGAACG    AAA^      CUC     A  C  C    U  UACUUU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Al Mi Mi Mi Sa Sa Sa Sa To
Mature sequence

Isc-Mir-5315_5p

mirBase accessionMIMAT0021386
Sequence
0- AACACAACAUCCGGACAAGCAC -22
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Star sequence

Isc-Mir-5315_3p*

mirBase accessionNone
Sequence
37- UCUUGCCCCGAAGUUGUCUCCG -59
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