| MirGeneDB ID | Isc-Novel-1 |
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| Family name |
ISC-NOVEL-1 (all species) |
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| Seed |
GUGGUCA |
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| Species |
Deer tick (Ixodes scapularis) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
I. scapularis
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| Node of Origin (family) |
I. scapularis
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Genome context
(GCF_016920785.2_ASM1692078v2_ISC) |
NW_024609884.1: 14998415-14998476 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCGAAUUCCCAAGAACACCUCCCUACUGCAGGUGAGAGGACAUAGCCAGUGCUGUUAUUUUCGAUUGGCAGUGGUCAUGUCUUCGCACUGGACGGUGGUGAAGGACUUGCUACGGUACUCCA
Get precursor sequence
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| Structure | 10 20 30 40 50
UCGAAUUCCCAAGAACA- - C CA-| A AG G UGUUAUU
CC UC CUACUG GGUG GAGGACAU CCA UGC \
GG AG GGUGGC UCAC CUUCUGUA GGU ACG U
ACCUCAUGGCAUCGUUCA A U AGG^ G CU G GUUAGCU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Star sequence |
Isc-Novel-1_5p* |
| mirBase accession | None |
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| Sequence |
0- GGUGAGAGGACAUAGCCAGUGC -22
Get sequence
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| Mature sequence |
Isc-Novel-1_3p |
| mirBase accession | None |
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| Sequence |
39- AGUGGUCAUGUCUUCGCACUGGA -62
Get sequence
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