MirGeneDB ID | Isc-Novel-1 |
Family name |
ISC-NOVEL-1 (all species) |
Seed |
GUGGUCA |
Species |
Deer tick (Ixodes scapularis) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
I. scapularis
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Node of Origin (family) |
I. scapularis
|
Genome context (IscaWI) |
DS834826: 12638-12699 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UUGAAUUCCCAAGAACACCUCCCUACUGCAGGUGAGAGGACAUAGCCAGUGCUGUUAUUUUCGAUUGGCAGUGGUCAUGUCUUCGCACUGGACGGUGGUGAAGGACUUGCUACGGUACUUCA
Get precursor sequence
|
Structure | 10 20 30 40 50
UUGAAUUCCCAAGAACA- - C CA-| A AG G UGUUAUU
CC UC CUACUG GGUG GAGGACAU CCA UGC \
GG AG GGUGGC UCAC CUUCUGUA GGU ACG U
ACUUCAUGGCAUCGUUCA A U AGG^ G CU G GUUAGCU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Al |
Mi |
Mi |
Mi |
Sa |
Sa |
Sa |
Sa |
To |
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Star sequence |
Isc-Novel-1_5p* |
mirBase accession | None |
Sequence |
0- GGUGAGAGGACAUAGCCAGUGC -22
Get sequence
|
Mature sequence |
Isc-Novel-1_3p |
mirBase accession | None |
Sequence |
39- AGUGGUCAUGUCUUCGCACUGGA -62
Get sequence
|