MirGeneDB 3.0

MirGeneDB ID

Laf-Novel-1

Family name LAF-NOVEL-1 (all species)
Seed GGAGUCA
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) L. africana
Node of Origin (family) L. africana
Genome context
(GCA_000001905.1_Loxafr3.0)
GL010100.1: 2231395-2231452 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AACAACUAUAAAUUGCUAAUUAUUGGCACCAGGAGUCAAAACCAGGUCCUGCCUGGUCCGAAUUGCAGGACCUGAUUUUGACUCCUGGUGCCAUUGUUUACUAGCUAUGUGACCUUCA
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Structure
        10        20          30        40        50        
AACAACUAUAAAUUGCUAAUUAU--|                 C          CUGGU 
                         UGGCACCAGGAGUCAAAA CAGGUCCUGC     C
                         ACCGUGGUCCUCAGUUUU GUCCAGGACG     C
ACUUCCAGUGUAUCGAUCAUUUGUU^                 A          UUAAG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Wh
Mature sequence

Laf-Novel-1_5p

mirBase accessionNone
Sequence
0- AGGAGUCAAAACCAGGUCCUGC -22
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Co-mature sequence

Laf-Novel-1_3p

mirBase accessionNone
Sequence
36- AGGACCUGAUUUUGACUCCUGG -58
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