MirGeneDB ID | Laf-Novel-1 |
Family name |
LAF-NOVEL-1 (all species) |
Seed |
GGAGUCA |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
L. africana
|
Node of Origin (family) |
L. africana
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010100.1: 2231395-2231452 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AACAACUAUAAAUUGCUAAUUAUUGGCACCAGGAGUCAAAACCAGGUCCUGCCUGGUCCGAAUUGCAGGACCUGAUUUUGACUCCUGGUGCCAUUGUUUACUAGCUAUGUGACCUUCA
Get precursor sequence
|
Structure | 10 20 30 40 50
AACAACUAUAAAUUGCUAAUUAU--| C CUGGU
UGGCACCAGGAGUCAAAA CAGGUCCUGC C
ACCGUGGUCCUCAGUUUU GUCCAGGACG C
ACUUCCAGUGUAUCGAUCAUUUGUU^ A UUAAG
110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Laf-Novel-1_5p |
mirBase accession | None |
Sequence |
0- AGGAGUCAAAACCAGGUCCUGC -22
Get sequence
|
Co-mature sequence |
Laf-Novel-1_3p |
mirBase accession | None |
Sequence |
36- AGGACCUGAUUUUGACUCCUGG -58
Get sequence
|