MirGeneDB ID | Laf-Novel-2 |
Family name |
LAF-NOVEL-2 (all species) |
Seed |
UCUGCCC |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
L. africana
|
Node of Origin (family) |
L. africana
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010039.1: 17238176-17238242 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGCUGUUACGUGGCUGCUGCCGAUGUCCAGGUGAGUGGCCUUUAGGGGCAGGUGGUAAAGCACCUAUGCCCUCGCUCUGCCCCUAAGUCACUCCCCUACCUUCCUGUGUCCCUAGGACCUGGUCUCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGCUGUUACGUGGCUGCUGCCGAUGUCC--| U CU - GUAAAGCA
AGG GAGUGGC UUAGGGGCAG GUG C
UCC CUCACUG AAUCCCCGUC CGC C
UCUCUGGUCCAGGAUCCCUGUGUCCUUCCA^ C -- U UCCCGUAU
120 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Laf-Novel-2_5p* |
mirBase accession | None |
Sequence |
0- GUGAGUGGCCUUUAGGGGCAGGUG -24
Get sequence
|
Mature sequence |
Laf-Novel-2_3p |
mirBase accession | None |
Sequence |
44- CUCUGCCCCUAAGUCACUCCCCU -67
Get sequence
|