MirGeneDB 3.0

MirGeneDB ID

Laf-Novel-2

Family name LAF-NOVEL-2 (all species)
Seed UCUGCCC
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) L. africana
Node of Origin (family) L. africana
Genome context
(GCA_000001905.1_Loxafr3.0)
GL010039.1: 17238176-17238242 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCUGUUACGUGGCUGCUGCCGAUGUCCAGGUGAGUGGCCUUUAGGGGCAGGUGGUAAAGCACCUAUGCCCUCGCUCUGCCCCUAAGUCACUCCCCUACCUUCCUGUGUCCCUAGGACCUGGUCUCU
Get precursor sequence
Structure
        10        20          30        40        50         60   
GGCUGUUACGUGGCUGCUGCCGAUGUCC--|  U       CU          -   GUAAAGCA 
                              AGG GAGUGGC  UUAGGGGCAG GUG        C
                              UCC CUCACUG  AAUCCCCGUC CGC        C
UCUCUGGUCCAGGAUCCCUGUGUCCUUCCA^  C       --          U   UCCCGUAU 
     120       110       100        90          80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Wh
Star sequence

Laf-Novel-2_5p*

mirBase accessionNone
Sequence
0- GUGAGUGGCCUUUAGGGGCAGGUG -24
Get sequence
Mature sequence

Laf-Novel-2_3p

mirBase accessionNone
Sequence
44- CUCUGCCCCUAAGUCACUCCCCU -67
Get sequence