MirGeneDB ID | Laf-Novel-3 |
---|---|
Family name | LAF-NOVEL-3 (all species) |
Seed | GGUCCUC |
Species | African bush elephant (Loxodonta africana) |
MiRBase ID | |
Paralogues | |
Orthologues | |
Node of Origin (locus) | L. africana |
Node of Origin (family) | L. africana |
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010172.1: 878270-878326 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GCCUGCCGGGCCAGCGGGCUCUUCUCUCUCUGGUCCUCGGUCCACUGGUCUUCUGGAAGAAGGAGGACGAGGGUGCCGAGGGCCGGCGAGAGGACGUGGCCAGCCUCCCGGUAGAGCGet precursor sequence |
Structure | 10 20 30 40 50 GCCUGCCGGGCCAGCGG---| UC U - A G UGGA GC UUCUCUC CUGGUCCUCGGU CC CU GUCUUC \ UG AGGAGAG GGCCGGGAGCCG GG GA CAGGAG A CGAGAUGGCCCUCCGACCGG^ C- C U - G GAAG 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Mature sequence | Laf-Novel-3_5p |
mirBase accession | None |
Sequence |
0- UGGUCCUCGGUCCACUGGUCUUC -23
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|
Star sequence | Laf-Novel-3_3p* |
mirBase accession | None |
Sequence |
34- GGACGAGGGUGCCGAGGGCCGGC -57
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