| MirGeneDB ID | Lgi-Novel-2-P2 |
|---|
| Family name |
LGI-NOVEL-2 (all species) |
|---|
| Seed |
CCACUCA |
|---|
| Species |
Owl limpet (Lottia gigantea) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Lgi-Novel-2-P1
|
|---|
| Orthologues |
|
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| Node of Origin (locus) |
L. gigantea
|
|---|
| Node of Origin (family) |
L. gigantea
|
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Genome context
(Lotgi1) |
LOTGIsca_95: 480768-480826 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CGUAACUGGGCUAAUAUUAGAGACCGGAAGUUGGAAGUUCACAUGGAUGUAGCCAUAUAGAACAGCUCCACUCAUGUGCACUUCCAGCUUUCUGGCUCGAAAAUCAACAAAGUGAGGAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGUAACUGGGCUAAUAUUA--| A - U GA U CAUAU
GAG CCGGAA GUUGGAAGU CACAUG UG AGC \
CUC GGUCUU CGACCUUCA GUGUAC AC UCG A
GAGGAGUGAAACAACUAAAAG^ - U C UC C ACAAG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Lgi-Novel-2-P2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UUGGAAGUUCACAUGGAUGUAGC -23
Get sequence
|
|---|
| Mature sequence |
Lgi-Novel-2-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UCCACUCAUGUGCACUUCCAGCU -59
Get sequence
|
|---|
