| MirGeneDB ID | Lhy-Novel-2 |
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| Family name |
LHY-NOVEL-2 (all species) |
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| Seed |
AAAUGCA |
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| Species |
Laevipilina (Monoplacophora) (Laevipilina hyalina) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
L. hyalina
|
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| Node of Origin (family) |
L. hyalina
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Genome context
(Mono_atcgn_nospaces) |
scaffold83642_29.1: 1363-1424 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAGGCAUCGUCUUUUCCUGGCGCCCCCAUUCGUGGCAGGUUCUGCGUUUGCACGAGACGUAAUGCAUUGUAAAUGCAUCACCUAUCACCGCCUGGGGGCACCUACUACGUCCGUCCGAGAUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAGGCAUCGUCUUUUCCU-- C UU -| GC UC CGAGACG
GG GCCCCCA C GUG AGGU UGCGUUUGCA \
CC CGGGGGU G CAC UCCA ACGUAAAUGU U
GUAGAGCCUGCCUGCAUCAU A CC C^ UA CU UACGUAA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Lhy-Novel-2_5p* |
| mirBase accession | None |
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| Sequence |
0- CGUGGCAGGUUCUGCGUUUGCA -22
Get sequence
|
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| Mature sequence |
Lhy-Novel-2_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UAAAUGCAUCACCUAUCACCGCC -62
Get sequence
|
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