| MirGeneDB ID | Llo-Novel-1-v2 |
|---|
| Family name |
LLO-NOVEL-1 (all species) |
|---|
| Seed |
CUGACCA |
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| Species |
Bootlace worm (Lineus longissimus) |
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| MiRBase ID |
|
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| Paralogues |
Llo-Novel-1-v1
|
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| Orthologues |
|
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| Node of Origin (locus) |
Lineidae
|
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| Node of Origin (family) |
Lineidae
|
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Genome context
(GCA_910592395.2_tnLinLong1) |
OU342993.1: 7380440-7380501 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAUUGAAUUGACCUGGGACAAGUUGUUAGUGUCCUAUAGCUUUGUGUGAGGGAAGGGUAAAGGAAUGCUGCCUGACCAUAGCUAUAGGAUGUUCGCGUCUGGUCCUUUCAUCACAGGUUUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAUUGAAUUGACCUGGG--| A U U UG U U G GAAGGGUAA
AC AG UGU AG UCCUAUAGCU UG GU AGG \
UG UC GCG UU AGGAUAUCGA AC CA UCC A
ACUUUGGACACUACUUUCC^ G U C GU U - G GUCGUAAGG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Llo-Novel-1-v2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GUCCUAUAGCUUUGUGUGAGGGA -23
Get sequence
|
|---|
| Mature sequence |
Llo-Novel-1-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
40- CCUGACCAUAGCUAUAGGAUGU -62
Get sequence
|
|---|
