MirGeneDB ID | Llo-Novel-3 |
Family name |
LLO-NOVEL-3 (all species) |
Seed |
CAAUAUC |
Species |
Bootlace worm (Lineus longissimus) |
MiRBase ID |
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Paralogues |
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Orthologues |
|
Node of Origin (locus) |
Lineidae
|
Node of Origin (family) |
Lineidae
|
Genome context (GCA_910592395.2_tnLinLong1) |
OU342998.1: 9077011-9077071 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACAUGACCGUAGAUCAUCUGGCCUGGGUGUCAGGCAUUCUAGAUAUGACUAUGAUUGAUAAACGCCAUAGCAAUAUCAUGAAUGCCUGGGCAUCCAGGUCUAGGAUUCGCAACCGCCGAGA
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|
Structure | 10 20 30 40 50
ACAUGACCGUAGAUCAU- - -| UA GA UGAUUGA
CUGG CCUGGGUG UCAGGCAUUC GAUAU CUA U
GAUC GGACCUAC GGUCCGUAAG CUAUA GAU A
AGAGCCGCCAACGCUUAG U G^ UA AC ACCGCAA
. 110 100 90 80 70 60 |
Deep sequencing |
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|
Comment | There is a second Drosha cut -1 on both arms. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Llo-Novel-3_5p* |
mirBase accession | None |
Sequence |
0- CAGGCAUUCUAGAUAUGACUA -21
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|
Mature sequence |
Llo-Novel-3_3p |
mirBase accession | None |
Sequence |
39- GCAAUAUCAUGAAUGCCUGGGC -61
Get sequence
|