MirGeneDB 3.0

MirGeneDB ID

Llo-Novel-3

Family name LLO-NOVEL-3 (all species)
Seed CAAUAUC
Species Bootlace worm (Lineus longissimus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) Lineidae
Node of Origin (family) Lineidae
Genome context
(GCA_910592395.2_tnLinLong1)
OU342998.1: 9077011-9077071 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACAUGACCGUAGAUCAUCUGGCCUGGGUGUCAGGCAUUCUAGAUAUGACUAUGAUUGAUAAACGCCAUAGCAAUAUCAUGAAUGCCUGGGCAUCCAGGUCUAGGAUUCGCAACCGCCGAGA
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Structure
        10         20          30        40        50         
ACAUGACCGUAGAUCAU-    -        -|         UA     GA   UGAUUGA 
                  CUGG CCUGGGUG UCAGGCAUUC  GAUAU  CUA       U
                  GAUC GGACCUAC GGUCCGUAAG  CUAUA  GAU       A
AGAGCCGCCAACGCUUAG    U        G^         UA     AC   ACCGCAA 
 .       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
 +
No No No No No No
Star sequence

Llo-Novel-3_5p*

mirBase accessionNone
Sequence
0- CAGGCAUUCUAGAUAUGACUA -21
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Mature sequence

Llo-Novel-3_3p

mirBase accessionNone
Sequence
39- GCAAUAUCAUGAAUGCCUGGGC -61
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