| MirGeneDB ID | Llo-Novel-4 |
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| Family name |
LLO-NOVEL-4 (all species) |
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| Seed |
GACACAG |
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| Species |
Bootlace worm (Lineus longissimus) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
Lineidae
|
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| Node of Origin (family) |
Lineidae
|
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Genome context
(GCA_910592395.2_tnLinLong1) |
OU343003.1: 13894278-13894337 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGAAGUUGGUGGAAAUCUGCGCGCGCGGGCACUGGUCACAAACUGUGUCCCAAAUCCAUCUAAAAUUGUGACACAGUUUGUUACGAGUACUCGCGUCCGCAUGGGCGAUGACGUCAUCAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GGAAGUUGGUGGAAAUC--| C C G C C AAUCCA
UGCG GCGCGGG ACU GU ACAAACUGUGUC CA U
ACGC UGCGCUC UGA CA UGUUUGACACAG GU C
CACUACUGCAGUAGCGGGU^ C A G U U UAAAAU
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut +1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Llo-Novel-4_5p* |
| mirBase accession | None |
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| Sequence |
0- ACUGGUCACAAACUGUGUCCCA -22
Get sequence
|
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| Mature sequence |
Llo-Novel-4_3p |
| mirBase accession | None |
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| Sequence |
38- UGACACAGUUUGUUACGAGUAC -60
Get sequence
|
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