| MirGeneDB ID | Llo-Novel-5 |
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| Family name |
LLO-NOVEL-5 (all species) |
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| Seed |
GCCGCAU |
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| Species |
Bootlace worm (Lineus longissimus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
Lineidae
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| Node of Origin (family) |
Lineidae
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Genome context
(GCA_910592395.2_tnLinLong1) |
OU343009.1: 11200654-11200715 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
ACGUCACACAGGAUCUCCCGCUUUCCACCGAUGACAGACAGAAUGCGCCAGGUGCAGUGAAUCAAUUAACUGCCGCAUUUUGUCCGUUAGCGGCGGAUUGUGGGCAUUCAUCUUUGACAUGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
ACGUCACACAGGAUCUC--| UU A A A C GUGCAGUG
CCGC UCC CCG UGAC GACAGAAUGCG CAG A
GGUG AGG GGC AUUG CUGUUUUACGC GUC A
GGUACAGUUUCUACUUACG^ UU C G C C AAUUAACU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut -1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
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| Star sequence |
Llo-Novel-5_5p* |
| mirBase accession | None |
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| Sequence |
0- AUGACAGACAGAAUGCGCCAGG -22
Get sequence
|
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| Mature sequence |
Llo-Novel-5_3p |
| mirBase accession | None |
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| Sequence |
40- UGCCGCAUUUUGUCCGUUAGCG -62
Get sequence
|
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