| MirGeneDB ID | Loc-Mir-727-P4-v2 |
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| Family name |
MIR-727 (all species) |
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| Seed |
UUGAGGC |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
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| Paralogues |
Loc-Mir-727-P3-v1
Loc-Mir-727-P3-v2
Loc-Mir-727-P4-v1
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| Orthologues |
Spt-Mir-727
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| Node of Origin (locus) |
L. oculatus
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| Node of Origin (family) |
Osteichthyes
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Genome context
(LepOcu1) |
LG14: 13263404-13263465 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGGAAAUAUGUAAUCCUGUAUGUCAUUUUCAGUCUUCAAUUCCUCCCAGCCCGUACUAUGGUAAUUGUGAGUUGAGGCGAGUUGAAGACUAAAAAUGCUGUACAGACACAAGUAGCAUUGUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GGGAAAUAUGUAAUCCU--| U C CU - CCGUACUAU
GUAUG CAUUUU AGUCUUCAAUUC CC CAGC G
CAUGU GUAAAA UCAGAAGUUGAG GG GUUG G
CUGUUACGAUGAACACAGA^ C A C- A AGUGUUAAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14) |
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Tissue expression
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| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Star sequence |
Loc-Mir-727-P4-v2_5p* |
| mirBase accession | None |
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| Sequence |
0- AGUCUUCAAUUCCUCCCAGCCC -22
Get sequence
|
|---|
| Mature sequence |
Loc-Mir-727-P4-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
40- GUUGAGGCGAGUUGAAGACUAA -62
Get sequence
|
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