| MirGeneDB ID | Loc-Novel-1 |
|---|
| Family name |
LOC-NOVEL-1 (all species) |
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| Seed |
UACUUGU |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
L. oculatus
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| Node of Origin (family) |
L. oculatus
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Genome context
(LepOcu1) |
LG1: 26020721-26020777 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CCCUUUUAAUAUCAUAUGAUUUAUUGUCAUGAAACCAACACAAAGGUAACUAUUGUUUCCAGACAGUUACUUGUGUGUUGGUUUAAUGGCAGUAAAUCAUCUUAGUCGCAAUGGUCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCCUUUUAAUAUCAUAU--| G A AUUGUU
GAUUUAUUGUCAU AAACCAACACA AGGUAACU \
CUAAAUGACGGUA UUUGGUUGUGU UUCAUUGA U
CCUGGUAACGCUGAUUCUA^ A G CAGACC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14) |
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Tissue expression
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| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Star sequence |
Loc-Novel-1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GAAACCAACACAAAGGUAACU -21
Get sequence
|
|---|
| Mature sequence |
Loc-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UUACUUGUGUGUUGGUUUAAU -57
Get sequence
|
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