MirGeneDB 2.1

MirGeneDB ID

Loc-Novel-1

Family name LOC-NOVEL-1 (all species)
Seed UACUUGU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) L. oculatus
Node of Origin (family) L. oculatus
Genome context
(LepOcu1)
LG1: 26020721-26020777 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCCUUUUAAUAUCAUAUGAUUUAUUGUCAUGAAACCAACACAAAGGUAACUAUUGUUUCCAGACAGUUACUUGUGUGUUGGUUUAAUGGCAGUAAAUCAUCUUAGUCGCAAUGGUCC
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Structure
        10          20        30        40        50        
CCCUUUUAAUAUCAUAU--|            G           A        AUUGUU 
                   GAUUUAUUGUCAU AAACCAACACA AGGUAACU      \
                   CUAAAUGACGGUA UUUGGUUGUGU UUCAUUGA      U
CCUGGUAACGCUGAUUCUA^            A           G        CAGACC 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Novel-1_5p*

mirBase accessionNone
Sequence
0- GAAACCAACACAAAGGUAACU -21
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Mature sequence

Loc-Novel-1_3p

mirBase accessionNone
Sequence
36- UUACUUGUGUGUUGGUUUAAU -57
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