MirGeneDB 3.0

MirGeneDB ID

Loc-Novel-2

Family name LOC-NOVEL-2 (all species)
Seed UAUGGGA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) L. oculatus
Node of Origin (family) L. oculatus
Genome context
(LepOcu1)
LG10: 2472995-2473051 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GGUGAUUUAAGUACUGAAGUGGAAUGUUGGUGGAACACUGCUUCUGUCAUUUGUCCUUUCAGCAGAUUAUGGGAGCAGAGUUUUUCCAAACCAUUGCCUCCAGGAAACAUCUUUUCA
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Structure
        10             20        30        40        50        
GGUGAUUUAAGUACUGA-----|    AAUG    UG    A          C   UGUCCU 
                      AGUGG    UUGG  GAAC CUGCUUCUGU AUU      \
                      UUACC    AACC  UUUG GACGAGGGUA UAG      U
ACUUUUCUACAAAGGACCUCCG^    A---    UU    A          U   ACGACU 
     110       100        90           80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Novel-2_5p*

mirBase accessionNone
Sequence
0- UGGAACACUGCUUCUGUCAUU -21
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Mature sequence

Loc-Novel-2_3p

mirBase accessionNone
Sequence
36- UUAUGGGAGCAGAGUUUUUCC -57
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