MirGeneDB ID | Loc-Novel-2 |
Family name |
LOC-NOVEL-2 (all species) |
Seed |
UAUGGGA |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
L. oculatus
|
Node of Origin (family) |
L. oculatus
|
Genome context (LepOcu1) |
LG10: 2472995-2473051 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
GGUGAUUUAAGUACUGAAGUGGAAUGUUGGUGGAACACUGCUUCUGUCAUUUGUCCUUUCAGCAGAUUAUGGGAGCAGAGUUUUUCCAAACCAUUGCCUCCAGGAAACAUCUUUUCA
Get precursor sequence
|
Structure | 10 20 30 40 50
GGUGAUUUAAGUACUGA-----| AAUG UG A C UGUCCU
AGUGG UUGG GAAC CUGCUUCUGU AUU \
UUACC AACC UUUG GACGAGGGUA UAG U
ACUUUUCUACAAAGGACCUCCG^ A--- UU A U ACGACU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
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Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Star sequence |
Loc-Novel-2_5p* |
mirBase accession | None |
Sequence |
0- UGGAACACUGCUUCUGUCAUU -21
Get sequence
|
Mature sequence |
Loc-Novel-2_3p |
mirBase accession | None |
Sequence |
36- UUAUGGGAGCAGAGUUUUUCC -57
Get sequence
|