| MirGeneDB ID | Loc-Novel-3 |
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| Family name |
LOC-NOVEL-3 (all species) |
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| Seed |
AAAGAUU |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
L. oculatus
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| Node of Origin (family) |
L. oculatus
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Genome context
(LepOcu1) |
LG11: 30596926-30596984 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGCAGUAUAUGUCUCUUACAAAGGAGCAAGUAAAGAUUUAUUCCAUGCUAGAAUUCCAUCUUCUUUUCAGCAUGUUAUAAACCUUUACUUGUUUCUUUGCAGCCUACGCAUGCUGAUGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGCAGUAUAUGUCUCUUA--| A UC A AUUCCA
CAAAGGAGCAAGUAAAG UUUAU CAUGCU GA U
GUUUCUUUGUUCAUUUC AAAUA GUACGA CU C
CGUAGUCGUACGCAUCCGAC^ C UU - UUUCUU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Mature sequence |
Loc-Novel-3_5p |
| mirBase accession | None |
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| Sequence |
0- UAAAGAUUUAUUCCAUGCUAGA -22
Get sequence
|
|---|
| Star sequence |
Loc-Novel-3_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- CAGCAUGUUAUAAACCUUUACU -59
Get sequence
|
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