MirGeneDB ID | Loc-Novel-4 |
Family name |
LOC-NOVEL-4 (all species) |
Seed |
GAAUGUC |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
L. oculatus
|
Node of Origin (family) |
L. oculatus
|
Genome context (LepOcu1) |
LG21: 5365345-5365401 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
GCAAUUAUGUCAAAAUGCAAUGCACUGAAGGACCAGAAAUGAGACACUCGUAUUUGGAGCAUAUAUGAAUGUCUCACUUCUGCACCUUUAGUGGUGACGGUAAGGGCUAGUAUUUAU
Get precursor sequence
|
Structure | 10 20 30 40 50
GCAAUUAUGUCAAAAUGCAAUG--| AC A C UUUGG
CACUGAAGG CAGAA UGAGACA UCGUA \
GUGAUUUCC GUCUU ACUCUGU AGUAU A
UAUUUAUGAUCGGGAAUGGCAGUG^ AC C A AUACG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Star sequence |
Loc-Novel-4_5p* |
mirBase accession | None |
Sequence |
0- GACCAGAAAUGAGACACUCGUA -22
Get sequence
|
Mature sequence |
Loc-Novel-4_3p |
mirBase accession | None |
Sequence |
35- UGAAUGUCUCACUUCUGCACCU -57
Get sequence
|