MirGeneDB 3.0

MirGeneDB ID

Loc-Novel-4

Family name LOC-NOVEL-4 (all species)
Seed GAAUGUC
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) L. oculatus
Node of Origin (family) L. oculatus
Genome context
(LepOcu1)
LG21: 5365345-5365401 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCAAUUAUGUCAAAAUGCAAUGCACUGAAGGACCAGAAAUGAGACACUCGUAUUUGGAGCAUAUAUGAAUGUCUCACUUCUGCACCUUUAGUGGUGACGGUAAGGGCUAGUAUUUAU
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Structure
        10        20          30        40        50        
GCAAUUAUGUCAAAAUGCAAUG--|        AC     A       C     UUUGG 
                        CACUGAAGG  CAGAA UGAGACA UCGUA     \
                        GUGAUUUCC  GUCUU ACUCUGU AGUAU     A
UAUUUAUGAUCGGGAAUGGCAGUG^        AC     C       A     AUACG 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Novel-4_5p*

mirBase accessionNone
Sequence
0- GACCAGAAAUGAGACACUCGUA -22
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Mature sequence

Loc-Novel-4_3p

mirBase accessionNone
Sequence
35- UGAAUGUCUCACUUCUGCACCU -57
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