MirGeneDB 3.0

MirGeneDB ID

Loc-Novel-6

Family name LOC-NOVEL-6 (all species)
Seed GUCUGAC
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) L. oculatus
Node of Origin (family) L. oculatus
Genome context
(LepOcu1)
LG5: 24780936-24780993 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCUCACUCACAAACUGUGCCGUGCCAGGAGAGUCUGACAAAUAUGCGUGACAUGGCUGUGUGUUGUCAUGCAUAAAUGUGAGACAUCUUUUUGCACAAAAUAAUGUGCAAUGUGUGAG
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Structure
        10        20          30         40        50        
CCUCACUCACAAACUGUGCC--    C      -|   G   AA           UGGCU 
                      GUGC AGGAGA GUCU ACA  UAUGCGUGACA     \
                      CACG UUUUCU CAGA UGU  AUACGUACUGU     G
GAGUGUGUAACGUGUAAUAAAA    U      A^   G   AA           UGUGU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Novel-6_5p

mirBase accessionNone
Sequence
0- AGUCUGACAAAUAUGCGUGACA -22
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Star sequence

Loc-Novel-6_3p*

mirBase accessionNone
Sequence
35- UCAUGCAUAAAUGUGAGACAUCU -58
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