MirGeneDB ID | Loc-Novel-6 |
Family name |
LOC-NOVEL-6 (all species) |
Seed |
GUCUGAC |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
L. oculatus
|
Node of Origin (family) |
L. oculatus
|
Genome context (LepOcu1) |
LG5: 24780936-24780993 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
CCUCACUCACAAACUGUGCCGUGCCAGGAGAGUCUGACAAAUAUGCGUGACAUGGCUGUGUGUUGUCAUGCAUAAAUGUGAGACAUCUUUUUGCACAAAAUAAUGUGCAAUGUGUGAG
Get precursor sequence
|
Structure | 10 20 30 40 50
CCUCACUCACAAACUGUGCC-- C -| G AA UGGCU
GUGC AGGAGA GUCU ACA UAUGCGUGACA \
CACG UUUUCU CAGA UGU AUACGUACUGU G
GAGUGUGUAACGUGUAAUAAAA U A^ G AA UGUGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
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Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Mature sequence |
Loc-Novel-6_5p |
mirBase accession | None |
Sequence |
0- AGUCUGACAAAUAUGCGUGACA -22
Get sequence
|
Star sequence |
Loc-Novel-6_3p* |
mirBase accession | None |
Sequence |
35- UCAUGCAUAAAUGUGAGACAUCU -58
Get sequence
|