| MirGeneDB ID | Mal-Novel-3 |
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| Family name |
MAL-NOVEL-3 (all species) |
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| Seed |
GAACAGU |
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| Species |
Asian swamp eel (Monopterus albus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
M. albus
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| Node of Origin (family) |
M. albus
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Genome context
(GCA_001952655.1_M_albus_1.0_genomic) |
KV884696.1: 22598-22658 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCAUUGUGGAUAUUUGAUAGAUCCUUGCUGUGAACAGUUUCGUUGGAUCUGUGUUCUUCUGAAGCAACAGUCCCAAUGAAAACUGUUGACCGUGAGGUGAUUGAAUCAUCCUGAGCAUCUA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GCAUUGUGGAUAUUUGAUAGAU-- UG U G -| AU GUUCUU
CCU C GU AACAG UUUCGUUGG CUGU C
GGA G CA UUGUC AAAGUAACC GACA U
AUCUACGAGUCCUACUAAGUUAGU GU C G A^ CU ACGAAG
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on the 3p arm. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Mal-Novel-3_5p |
| mirBase accession | None |
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| Sequence |
0- UGAACAGUUUCGUUGGAUCUGU -22
Get sequence
|
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| Star sequence |
Mal-Novel-3_3p* |
| mirBase accession | None |
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| Sequence |
38- AGUCCCAAUGAAAACUGUUGACC -61
Get sequence
|
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