| MirGeneDB ID | Mdo-Novel-1 |
|---|
| Family name |
MDO-NOVEL-1 (all species) |
|---|
| Seed |
CUGCCUC |
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| Species |
Gray short-tailed opossum (Monodelphis domestica) |
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| MiRBase ID |
|
|---|
| Paralogues |
|
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| Orthologues |
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| Node of Origin (locus) |
M. domestica
|
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| Node of Origin (family) |
M. domestica
|
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Genome context
(monDom5_add) |
1: 717207665-717207742 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GGACCCACGAAAGACAAUUCAAGGAGAUAAACAGGGCAAGCAGGGGCACAGGUUACCCCUCUGUGAUGAAACAGGGCACUCCAAGCCCUGCCUCUACUUGCCUUGGGUAGCUCUUUGAUACCAGCAUCUGAGGACCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GGACCCACGAAAGACAAU--| A AA C CA UACCCCUCUGUGAUG
UCAAGGAG UA CAGGGCAAG AGGGGCA GGU \
AGUUUCUC AU GUUCCGUUC UCUCCGU CCG A
AACCAGGAGUCUACGACCAU^ G GG A C- AACCUCACGGGACAA
130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Mdo-Novel-1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACAGGGCAAGCAGGGGCACAGGU -23
Get sequence
|
|---|
| Mature sequence |
Mdo-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
56- CCUGCCUCUACUUGCCUUGGGU -78
Get sequence
|
|---|
