MirGeneDB ID | Nag-Novel-2 |
Family name |
NAG-NOVEL-2 (all species) |
Seed |
AAACUUA |
Species |
Thorny-headed worm 1 (Neoechinorhynchus agilis) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
N.agilis
|
Node of Origin (family) |
N.agilis
|
Genome context (N_agilis_genome_min1000_bacfree) |
k149_2001: 1845-1902 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
CUCUCAUCGUAUACUAGAAGGGACCUCUUCAGAAUCGCUUGUAAGUUUUCUACUAUGUAAGCAGUAGAAAACUUACAAACCAUUCUGAAGUUCAAUAUUGAGGAAAAAAUAUUAAAAU
Get precursor sequence
|
Structure | 10 20 30 40 50
CUCUCAUCGUAUACUAGAAG-----| CUC CGC ACUAUG
GGAC UUCAGAAU UUGUAAGUUUUCU U
CUUG AAGUCUUA AACAUUCAAAAGA A
UAAAAUUAUAAAAAAGGAGUUAUAA^ --- CCA UGACGA
110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
|
Motifs | No |
Tissue expression
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Star sequence |
Nag-Novel-2_5p* |
mirBase accession | None |
Sequence |
0- AGAAUCGCUUGUAAGUUUUCU -21
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|
Mature sequence |
Nag-Novel-2_3p |
mirBase accession | None |
Sequence |
37- AAAACUUACAAACCAUUCUGA -58
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