MirGeneDB ID | Nve-Mir-2027 |
Family name |
MIR-2027 (all species) |
Seed |
UGCGAUU |
Species |
Starlet sea anemone (Nematostella vectensis) |
MiRBase ID |
nve-mir-2027
|
Paralogues |
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Orthologues |
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Node of Origin (locus) |
N. vectensis
|
Node of Origin (family) |
N. vectensis
|
Genome context (GCF_000209225.1_ASM20922v1_NVE) |
NW_001834173.1: 295192-295244 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAGAUCUUUCAAUCCGAGAGCCUUAAGGCUUGCUUGUUGGUAAUUUUGCAUCUGUUGCACAUGCGAUUUUACCAAAAUGCAAUUCUUAUGGUUCAGUGAUCAGGAACCCAAUA
Get precursor sequence
|
Structure | 10 20 30 40 50
CAGAUCUUUCAAUCCGA--| U GC UUG UU C GU
GAGCC UAAG UUGC UUGGUAA UUGCAU U \
CUUGG AUUC AACG AACCAUU AGCGUA A U
AUAACCCAAGGACUAGUGA^ U UU UAA UU C CG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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|
Star sequence |
Nve-Mir-2027_5p* |
mirBase accession | MIMAT0009772 |
Sequence |
0- UGCUUGUUGGUAAUUUUGCAUCU -23
Get sequence
|
Mature sequence |
Nve-Mir-2027_3p |
mirBase accession | MIMAT0009773 |
Sequence |
30- AUGCGAUUUUACCAAAAUGCAAU -53
Get sequence
|