| MirGeneDB ID | Nve-Mir-2029 |
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| Family name |
MIR-2029 (all species) |
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| Seed |
ACGCAAU |
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| Species |
Starlet sea anemone (Nematostella vectensis) |
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| MiRBase ID |
nve-mir-2029
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| Paralogues |
|
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| Orthologues |
Asp-Mir-2029
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| Node of Origin (locus) |
Anenthemonae
|
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| Node of Origin (family) |
Anenthemonae
|
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Genome context
(GCF_000209225.1_ASM20922v1_NVE) |
NW_001834331.1: 157661-157711 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UAGAAAGCACAUAGUGUGGCAUUUAGGUGAUACGCAAUCCCUAGGUUACCAUGUCAGAUGGUAAACUAUGGAUUGCGCUUCUCCUAACUUGCCUAACUGCAAUGCUACAGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAGAAAGCACAUAGUGU- U-| U UA C G GU
GGCA UUAGG GA CGCAAUCC UAG UUACCAU \
CCGU AAUCC CU GCGUUAGG AUC AAUGGUA C
CGACAUCGUAACGUCAAU UC^ U UC U A GA
. 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Nve-Mir-2029_5p |
| mirBase accession | MIMAT0009778 |
|---|
| Sequence |
0- UACGCAAUCCCUAGGUUACCAU -22
Get sequence
|
|---|
| Star sequence |
Nve-Mir-2029_3p* |
| mirBase accession | MIMAT0009779 |
|---|
| Sequence |
29- GGUAAACUAUGGAUUGCGCUUC -51
Get sequence
|
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