MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-1339

Family name MIR-1339 (all species)
Seed GAUGCAA
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-1339
Paralogues
Orthologues
Node of Origin (locus) O. anatinus
Node of Origin (family) O. anatinus
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041734.1: 17894855-17894915 [+]
Precursor
(pre-Mir +30nt flank)
AUGAUGAAAGCACUACUAAGAACUAGAUUCAGAUGCAAGAGAAUUUUCAGUUGUCAGUUUGGGUUGACUGAAAACUCAUUUUGCAUGCAGAAUCCAGUUUGAAUAUCAAAUCCGCCACAGA
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Structure
        10          20        30         40         50         
AUGAUGAAAGCACUACUAA--     A     AG-        -| A        UGUCAGU 
                     GAACU GAUUC   AUGCAAGA GA UUUUCAGU       \
                     UUUGA CUAAG   UACGUUUU CU AAAAGUCA       U
AGACACCGCCUAAACUAUAAG     C     ACG        A^ C        GUUGGGU 
 .       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on the 3p arm.
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-1339_5p

mirBase accessionMIMAT0006861
Sequence
0- AGAUGCAAGAGAAUUUUCAGU -21
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Star sequence

Oan-Mir-1339_3p*

mirBase accessionMIMAT0006862
Sequence
38- UGAAAACUCAUUUUGCAUGCAGA -61
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