MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-1340

Family name MIR-1340 (all species)
Seed GCUGUCC
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-1340
Paralogues
Orthologues
Node of Origin (locus) O. anatinus
Node of Origin (family) O. anatinus
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041739.1: 1264465-1264519 [-]
Precursor
(pre-Mir +30nt flank)
CGUACGUUUGCACACACCUAUGGUGUCGUCUUCCAAUCCAGAGGACAGCCAGAGAGAGAGACCUGCUGUCCUUUGUAUUAGGAGAUAACAUCACGGGCAGUAAAGUUGUGAGCGC
Get precursor sequence
Structure
        10          20        30        40        50       
CGUACGUUUGCACACAC--|UA      CG     C   C           C  AGAG 
                   C  UGGUGU  UCUUC AAU CAGAGGACAGC AG    A
                   G  ACUACA  AGAGG UUA GUUUCCUGUCG UC    G
CGCGAGUGUUGAAAUGACG^GC      AU     A   U           -  CAGA 
   110       100        90        80        70         60
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Oan-Mir-1340_5p*

mirBase accessionMIMAT0006868
Sequence
0- UUCCAAUCCAGAGGACAGCCAGA -23
Get sequence
Mature sequence

Oan-Mir-1340_3p

mirBase accessionMIMAT0006869
Sequence
33- UGCUGUCCUUUGUAUUAGGAGA -55
Get sequence