| MirGeneDB ID | Oan-Mir-1400 |
|---|
| Family name |
MIR-1400 (all species) |
|---|
| Seed |
AUCCCAC |
|---|
| Species |
Platypus (Ornithorhynchus anatinus) |
|---|
| MiRBase ID |
oan-mir-1400
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
O. anatinus
|
|---|
| Node of Origin (family) |
O. anatinus
|
|---|
Genome context
(mOrnAna1.p.v1_plustraces) |
NC_041750.1: 19507595-19507653 [-]
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAUGGCCAAAGACAUGGGCGCAUGAACAGGGAUGGACAGGGUAUGGGAGGAGACUGCAUUCUUCUGCUCAUCCCACUCCAAUCCAUCCAUGUCCCCGUUCCUACACCCCAAACUGGGCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAUGGCCAAAGACAUGG----| CAU A G CAG UA G ACUGCA
GCG GA CA GGAUGGA GG UGGGA GAG U
UGC CU GU CCUACCU CC ACCCU CUC U
ACGGGUCAAACCCCACAUCCU^ CC- - A AA- UC A GUCUUC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Oan-Mir-1400_5p* |
| mirBase accession | MIMAT0007205 |
|---|
| Sequence |
0- GAUGGACAGGGUAUGGGAGGAG -22
Get sequence
|
|---|
| Mature sequence |
Oan-Mir-1400_3p |
| mirBase accession | MIMAT0007206 |
|---|
| Sequence |
38- CAUCCCACUCCAAUCCAUCCA -59
Get sequence
|
|---|
