| MirGeneDB ID | Oan-Mir-1401 |
|---|
| Family name |
MIR-1401 (all species) |
|---|
| Seed |
UUCUGAC |
|---|
| Species |
Platypus (Ornithorhynchus anatinus) |
|---|
| MiRBase ID |
oan-mir-1401
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
O. anatinus
|
|---|
| Node of Origin (family) |
O. anatinus
|
|---|
Genome context
(mOrnAna1.p.v1_plustraces) |
NC_041750.1: 23137729-23137791 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUAGUUCCUGAGGUCAUGCGAGGAUAGCUGUUUCUGACCACCACCGGCCUCUUCCUUCCCAUCAGUGUUAGAGGCCAAUGGCAGUCAGAAAUGGCUCGCCUUGGCUCUCUGCAAGAAACGUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CUAGUUCCUGAGGUCAUG--| AU CA CC UCCUUCCC
CGAGG AGCUGUUUCUGAC CCA GGCCUCU \
GUUCC UCGGUAAAGACUG GGU CCGGAGA A
GGUGCAAAGAACGUCUCUCG^ GC AC AA UUGUGACU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Oan-Mir-1401_5p |
| mirBase accession | MIMAT0007207 |
|---|
| Sequence |
0- UUUCUGACCACCACCGGCCUCU -22
Get sequence
|
|---|
| Star sequence |
Oan-Mir-1401_3p* |
| mirBase accession | MIMAT0007208 |
|---|
| Sequence |
41- AGGCCAAUGGCAGUCAGAAAUG -63
Get sequence
|
|---|
