| MirGeneDB ID | Obi-Mir-12500-v2 |
|---|
| Family name |
MIR-12500 (all species) |
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| Seed |
GUCGGCU |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
Obi-Mir-12500-v1
Obi-Mir-12500-v3
|
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| Orthologues |
Esc-Mir-12500-v2
Npo-Mir-12500
Ovu-Mir-12500-v2
|
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| Node of Origin (locus) |
Cephalopoda
|
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| Node of Origin (family) |
Cephalopoda
|
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Genome context
(PRJNA270931_OBI) |
KQ418486: 141081-141141 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CCCUGCCUGUGAAGUAAGGGUAGCUCCAGCCAAACACCCCGCCGGCUGAAAAGGGAAUUCUCUCACCUUGUCGGCUGACCGGUUGUUUGGUGGGUUCCACCCCAGAUUCUACUAUAUAUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCCUGCCUGUGAAGUAA-- --| U G CC C- A GGAAUU
GGGU AGC CCA CCAAACA CCG CGGCUGA AAG \
CCCA UUG GGU GGUUUGU GGC GUCGGCU UUC C
UGUAUAUAUCAUCUUAGAC CC^ - - U- CA G CACUCU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Obi-Mir-12500-v2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAAACACCCCGCCGGCUGAAAAG -23
Get sequence
|
|---|
| Mature sequence |
Obi-Mir-12500-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UGUCGGCUGACCGGUUGUUUGGU -61
Get sequence
|
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