| MirGeneDB ID | Obi-Mir-12530 |
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| Family name |
MIR-12530 (all species) |
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| Seed |
GAAGAGA |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Esc-Mir-12530
Ovu-Mir-12530
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(PRJNA270931_OBI) |
KQ422137: 14555-14623 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUGAACGAUUCCCAAACGCUCCCUCAUAGGUGAAGAGACUGUGCAGGUCUGUGUGCUAUGUUAGCGACAACACUCACAGACACGCGCAGUCUACUCACUGCUGAGGCUGGCUAUACCAACAGAGAGAAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GUGAACGAUUCCCAAAC- C-| UA AG AG GUGCUAUGUUA
GCU CCUCA GGUGA AGACUGUGC GUCUGU \
CGG GGAGU UCACU UCUGACGCG CAGACA G
AAAGAGAGACAACCAUAU UC^ CG CA CA CUCACAACAGC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Mature sequence |
Obi-Mir-12530_5p |
| mirBase accession | None |
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| Sequence |
0- UGAAGAGACUGUGCAGGUCUGU -22
Get sequence
|
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| Star sequence |
Obi-Mir-12530_3p* |
| mirBase accession | None |
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| Sequence |
47- AGACACGCGCAGUCUACUCACU -69
Get sequence
|
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