| MirGeneDB ID | Obi-Mir-12556 |
|---|
| Family name |
MIR-12556 (all species) |
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| Seed |
UUCCGUA |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Ovu-Mir-12556
|
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| Node of Origin (locus) |
Octopus
|
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| Node of Origin (family) |
Octopus
|
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Genome context
(PRJNA270931_OBI) |
KQ416662: 704300-704354 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUGAAUGUCAUUCGGUAUGUACAUCGGCUAUUUCCGUACGUAGCACAUAUGUAUGUUUUGAACAUAUAAACUCCAUACGGUUAUAGCUUGUGUAUAUUUUUCAUCAUAUUCUUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUGAAUGUCAUUCGGUA--| C UU CGU CAC AUGU
UGUACAU GGCUAU CCGUA AG AUAUGU \
AUAUGUG UCGAUA GGCAU UC UAUACA U
UGUUCUUAUACUACUUUUU^ U UU ACC AAA AGUU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Obi-Mir-12556_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUUCCGUACGUAGCACAUAUGU -22
Get sequence
|
|---|
| Star sequence |
Obi-Mir-12556_3p* |
| mirBase accession | None |
|---|
| Sequence |
34- UAUAAACUCCAUACGGUUAUA -55
Get sequence
|
|---|
