| MirGeneDB ID | Obi-Mir-12562 |
|---|
| Family name |
MIR-12562 (all species) |
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| Seed |
GUCCUUC |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Ovu-Mir-12562
|
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| Node of Origin (locus) |
Octopus
|
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| Node of Origin (family) |
Octopus
|
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Genome context
(PRJNA270931_OBI) |
KQ415914: 334990-335050 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GGUUCCGGUUAACGGAGAAGGUAUUGUCAUAGUAACAUUGGGGGAAGAUUGAAAAAACAUAACAAGUUCGUCCUUCUCCAAUGUAUGCUAUUGAUGCAUCUUGUCGUCUUGACGCACGUUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGUUCCGGUUAACGGAG-- AUU - -| A U AAAAACA
AAGGU GUC AUAGUA ACAUUGGGGGA GAU GA \
UUCUA UAG UAUCGU UGUAACCUCUU CUG CU U
AUUGCACGCAGUUCUGCUG CG- U A^ C - UGAACAA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Obi-Mir-12562_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUAACAUUGGGGGAAGAUUGA -22
Get sequence
|
|---|
| Mature sequence |
Obi-Mir-12562_3p |
| mirBase accession | None |
|---|
| Sequence |
38- CGUCCUUCUCCAAUGUAUGCUAU -61
Get sequence
|
|---|
