| MirGeneDB ID | Obi-Mir-12571 |
|---|
| Family name |
MIR-12571 (all species) |
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| Seed |
CAUGAUC |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Ovu-Mir-12571
|
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| Node of Origin (locus) |
Octopus
|
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| Node of Origin (family) |
Octopus
|
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Genome context
(PRJNA270931_OBI) |
KQ423845: 5296-5353 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UAUUGACUUCAAAGAAGAGAAUCUAUUAGCUCAUGAUCAUAGAACAAGAGACAAUAGGGAGAAAGGUCUCUUUUCUGUGAUCAUGAAGUGAUGUAUUUCCUCUGACCUGGUCAGUUAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAUUGACUUCAAAGAAGA--| C GC C AAUAGG
GAAU UAUUA UCAUGAUCAUAGAA AAGAGAC \
UUUA GUAGU AGUACUAGUGUCUU UUCUCUG G
GAUUGACUGGUCCAGUCUCC^ U GA - GAAAGA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Obi-Mir-12571_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCAUGAUCAUAGAACAAGAGACA -23
Get sequence
|
|---|
| Star sequence |
Obi-Mir-12571_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- UCUCUUUUCUGUGAUCAUGAAG -58
Get sequence
|
|---|
