| MirGeneDB ID | Obi-Mir-12578-v2 |
|---|
| Family name |
MIR-12578 (all species) |
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| Seed |
GGAGCUG |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
Obi-Mir-12578-v1
|
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| Orthologues |
Ovu-Mir-12578-v2
|
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| Node of Origin (locus) |
Octopus
|
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| Node of Origin (family) |
Octopus
|
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Genome context
(PRJNA270931_OBI) |
KQ418719: 174845-174904 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UUGUUUAUUAGAUCAACAUCUUGGGAAACCACUUUAAUAUGCAGUCUCCUUUAGUCUGUCUAAUUAAAAGGAGCUGUGUAUUAGAAGAGAUUUGCCAAGAAAUCAGGCACCAAAAUUCUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUGUUUAUUAGAUCAACA-- G CCAC-| U AGUCUG
UCUUGG AAA UUUAAUAUGCAG CUCCUUU U
AGAACC UUU AGAUUAUGUGUC GAGGAAA C
AUCUUAAAACCACGGACUAA G AGAGA^ - AUUAAU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Obi-Mir-12578-v2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACUUUAAUAUGCAGUCUCCUUU -22
Get sequence
|
|---|
| Mature sequence |
Obi-Mir-12578-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
38- AGGAGCUGUGUAUUAGAAGAGA -60
Get sequence
|
|---|
