| MirGeneDB ID | Obi-Novel-1 |
|---|
| Family name |
CEP-NOVEL-1 (all species) |
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| Seed |
GGGGAUG |
|---|
| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
|
|---|
| Orthologues |
Esc-Novel-1
Npo-Novel-1
Ovu-Novel-1
|
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| Node of Origin (locus) |
Cephalopoda
|
|---|
| Node of Origin (family) |
Cephalopoda
|
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Genome context
(PRJNA270931_OBI) |
KQ417540: 703817-703877 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UCAAGGGAUCUACAACACUUGGCUAGAUAAUGCCCUUCACAGGUAUCUCCUGGAUAUGAACUGAAACCUGGGGAUGCUGUGAAUGGUUCUUACCUGGCCAGGAUUACGUCGAAAGGGUUUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCAAGGGAUCUACAACA-- A U-| C G U AUAUGA
CUUGGCUAG UAA GCC UUCACAG UAUCUCC GG \
GGACCGGUC AUU UGG AAGUGUC GUAGGGG CC A
AUUUGGGAAAGCUGCAUUA C CU^ U - U AAAGUC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Obi-Novel-1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGCCCUUCACAGGUAUCUCCUGG -23
Get sequence
|
|---|
| Mature sequence |
Obi-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UGGGGAUGCUGUGAAUGGUUCUU -61
Get sequence
|
|---|
