MirGeneDB ID | Obi-Novel-14 |
Family name |
COL-NOVEL-14 (all species) |
Seed |
CCACGGU |
Species |
California two-spot octopus (Octopus bimaculoides) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Esc-Novel-14
Ovu-Novel-14
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Coleoidea
|
Genome context (PRJNA270931_OBI) |
KQ419141: 202251-202313 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGAAAAUUGAGAAGAAACAGGCAAUUAGUAACUGGGUUUUCACUGAUGUCACGAACUAUUUCAAAUAUAUGACCACGGUGUAUAAUUCAGUAACUAGUAGCUUGUCUUACGACACUAAUAUUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGAAAAUUGAGAAGAAA-- A A UU-| AU CGAACUAU
CAGGC AUUAGU ACUGGGUU CACUG GUCA U
GUUCG UGAUCA UGACUUAA GUGGC CAGU U
AUUAUAAUCACAGCAUUCU A A UAU^ AC AUAUAAAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Obi-Novel-14_5p* |
mirBase accession | None |
Sequence |
0- ACUGGGUUUUCACUGAUGUCA -21
Get sequence
|
Mature sequence |
Obi-Novel-14_3p |
mirBase accession | None |
Sequence |
41- ACCACGGUGUAUAAUUCAGUAA -63
Get sequence
|