| MirGeneDB ID | Ocu-Mir-12090 |
|---|
| Family name |
MIR-12090 (all species) |
|---|
| Seed |
CUCACGG |
|---|
| Species |
Rabbit (Oryctolagus cuniculus) |
|---|
| MiRBase ID |
ocu-mir-12090
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
O. cuniculus
|
|---|
| Node of Origin (family) |
O. cuniculus
|
|---|
Genome context
(oryCun2_add) |
chrUn0504: 10221-10281 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CGAAGCCCGGGGAGCUGCCGCCUGUGCCGGUGUCAGGCUCGGCAGGGACACGCUUCCUACUGAGAUGGCGUCUCACGGCGAGCCUGAUGCCGGCCUGGGCUGGGGGCCUGGCGACUCCUCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CGAAGCCCGGGGAGCUG- -| U G AGG C CUUCCUA
CC GCCUG GCCGGUGUCAGGCUCG C GA ACG C
GG CGGGU CGGCCGUAGUCCGAGC G CU UGC U
UCUCCUCAGCGGUCCGGG U^ C - GCA C GGUAGAG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Ocu-Mir-12090_5p* |
| mirBase accession | MIMAT0048619 |
|---|
| Sequence |
0- UGUCAGGCUCGGCAGGGACACG -22
Get sequence
|
|---|
| Mature sequence |
Ocu-Mir-12090_3p |
| mirBase accession | MIMAT0048620 |
|---|
| Sequence |
40- UCUCACGGCGAGCCUGAUGCC -61
Get sequence
|
|---|
