MirGeneDB ID | Ofu-Novel-1 |
Family name |
OFU-NOVEL-1 (all species) |
Seed |
AUUGAAC |
Species |
Tubeworm (Owenia fusiformis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
O. fusiformis
|
Node of Origin (family) |
O. fusiformis
|
Genome context (GCA_903813345.2_Owenia) |
CAIIXF020000005.1: 17204261-17204318 [-]
|
Precursor (pre-Mir +30nt flank) |
UGGUUUGGUGACAACUAGAAAGGCCAGGUUUGGUGGGUGGUGGUACAACAGCUUAAAGUAAAGUGCUAUUGAACCACCAGCCAGCAAGUUAAGGGGCUCUUAAAUCAACAAACAACAU
Get precursor sequence
|
Structure | 10 20 30 40 50
UGGUUUGGUGACAACUAGAAA AGG---| G G A C UUAAA
GGCC UUUG UGG UGGUGGU CAA AGC G
UCGG GAAC ACC ACCACCA GUU UCG U
UACAACAAACAACUAAAUUC- GGAAUU^ G G A A UGAAA
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ofu-Novel-1_5p* |
mirBase accession | None |
Sequence |
0- UGGUGGGUGGUGGUACAACAGC -22
Get sequence
|
Mature sequence |
Ofu-Novel-1_3p |
mirBase accession | None |
Sequence |
36- UAUUGAACCACCAGCCAGCAAG -58
Get sequence
|