| MirGeneDB ID | Ofu-Novel-3 |
|---|
| Family name |
OFU-NOVEL-3 (all species) |
|---|
| Seed |
ACUGCAA |
|---|
| Species |
Tubeworm (Owenia fusiformis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
O. fusiformis
|
|---|
| Node of Origin (family) |
O. fusiformis
|
|---|
Genome context
(GCA_903813345.2_Owenia) |
CAIIXF020000005.1: 12026764-12026823 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
GUUGAGGACAUGAGAAUGUCAGUCUGGAUUCCAGCCUUAUUUGUGUACAGUGCGUGAUAUAAACUGCAACUGCAACAUGUAAGGCUGUUUUCCUGAGAAGACACUGCUACAAUCAUACCG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUUGAGGACAUGAGAAU- AG-| U UUC U GUA - GUGAU
GUC UC GGA CAGCCUUAU UGU CAGU GC A
CAG AG CCU GUCGGAAUG ACA GUCA CG U
GCCAUACUAACAUCGUCA AAG^ U UUU U AC- A UCAAA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Ofu-Novel-3_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CCAGCCUUAUUUGUGUACAGUGC -23
Get sequence
|
|---|
| Mature sequence |
Ofu-Novel-3_3p |
| mirBase accession | None |
|---|
| Sequence |
37- AACUGCAACAUGUAAGGCUGUUU -60
Get sequence
|
|---|
