| MirGeneDB ID | Ofu-Novel-3 |
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| Family name |
OFU-NOVEL-3 (all species) |
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| Seed |
ACUGCAA |
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| Species |
tubeworm (Owenia fusiformis) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
O. fusiformis
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| Node of Origin (family) |
O. fusiformis
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Genome context
(GCA_903813345.2_Owenia) |
CAIIXF020000005.1: 12026764-12026823 [+]
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Precursor
(pre-Mir +30nt flank) |
GUUGAGGACAUGAGAAUGUCAGUCUGGAUUCCAGCCUUAUUUGUGUACAGUGCGUGAUAUAAACUGCAACUGCAACAUGUAAGGCUGUUUUCCUGAGAAGACACUGCUACAAUCAUACCG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUUGAGGACAUGAGAAU- AG-| U UUC U GUA - GUGAU
GUC UC GGA CAGCCUUAU UGU CAGU GC A
CAG AG CCU GUCGGAAUG ACA GUCA CG U
GCCAUACUAACAUCGUCA AAG^ U UUU U AC- A UCAAA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Star sequence |
Ofu-Novel-3_5p* |
| mirBase accession | None |
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| Sequence |
0- CCAGCCUUAUUUGUGUACAGUGC -23
Get sequence
|
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| Mature sequence |
Ofu-Novel-3_3p |
| mirBase accession | None |
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| Sequence |
37- AACUGCAACAUGUAAGGCUGUUU -60
Get sequence
|
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