| MirGeneDB ID | Ofu-Novel-5 |
|---|
| Family name |
OFU-NOVEL-5 (all species) |
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| Seed |
AGAGUCC |
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| Species |
Tubeworm (Owenia fusiformis) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
O. fusiformis
|
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| Node of Origin (family) |
O. fusiformis
|
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Genome context
(GCA_903813345.2_Owenia) |
CAIIXF020000009.1: 37180959-37181018 [+]
|
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Precursor
(pre-Mir +30nt flank) |
GCUGCUCAAGACAUUAAUGCUGUUUUAGUUUAGAGUCCAUGGUAUCUGAAAUCAGGAAUUGAAUUGACUUCAGUACCAUGAGGCCCUAAUACUGAACAGUUCAACAACAAUUGCUUACCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCUGCUCAAGACAUUAAU-- U - A -| U A AGGAA
GCUG UUUAGU UUAG GUC CAUGGUA CUGAA UC U
UGAC AAGUCA AAUC CGG GUACCAU GACUU AG U
ACCAUUCGUUAACAACAACU - U C A^ - C UUAAG
. 110 100 90 80 70 60 |
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| Deep sequencing |
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| Comment | There are Dicer cuts +1 and -1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
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| Mature sequence |
Ofu-Novel-5_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAGAGUCCAUGGUAUCUGAAAUC -23
Get sequence
|
|---|
| Star sequence |
Ofu-Novel-5_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- CUUCAGUACCAUGAGGCCCUAAU -60
Get sequence
|
|---|
