| MirGeneDB ID | Ofu-Novel-5 |
|---|
| Family name |
OFU-NOVEL-5 (all species) |
|---|
| Seed |
AGAGUCC |
|---|
| Species |
tubeworm (Owenia fusiformis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
O. fusiformis
|
|---|
| Node of Origin (family) |
O. fusiformis
|
|---|
Genome context
(GCA_903813345.2_Owenia) |
CAIIXF020000009.1: 37180959-37181018 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
GCUGCUCAAGACAUUAAUGCUGUUUUAGUUUAGAGUCCAUGGUAUCUGAAAUCAGGAAUUGAAUUGACUUCAGUACCAUGAGGCCCUAAUACUGAACAGUUCAACAACAAUUGCUUACCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCUGCUCAAGACAUUAAU-- U - A -| U A AGGAA
GCUG UUUAGU UUAG GUC CAUGGUA CUGAA UC U
UGAC AAGUCA AAUC CGG GUACCAU GACUU AG U
ACCAUUCGUUAACAACAACU - U C A^ - C UUAAG
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There are Dicer cuts +1 and -1 on both arms. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Ofu-Novel-5_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAGAGUCCAUGGUAUCUGAAAUC -23
Get sequence
|
|---|
| Star sequence |
Ofu-Novel-5_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- CUUCAGUACCAUGAGGCCCUAAU -60
Get sequence
|
|---|
