| MirGeneDB ID | Ovu-Mir-12500-v3 |
|---|
| Family name |
MIR-12500 (all species) |
|---|
| Seed |
UCGGCUG |
|---|
| Species |
Common octopus (Octopus vulgaris) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Ovu-Mir-12500-v1
Ovu-Mir-12500-v2
|
|---|
| Orthologues |
Esc-Mir-12500-v3
Npo-Mir-12500
Obi-Mir-12500-v3
|
|---|
| Node of Origin (locus) |
Cephalopoda
|
|---|
| Node of Origin (family) |
Cephalopoda
|
|---|
Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01019472.1: 106418-106478 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCCUGCCUGUGAAGUAAGGGUAGCUCCAGCCAAACACCCCGCCGGCUGAAAAGGGAAUUCUCUCACCUUGUCGGCUGACCGGUUGUUUGGUGGGUUCCACCCCAGAUUCUACUAUAUAUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCCUGCCUGUGAAGUAA-- --| U G CC C- A GGGAAUU
GGGU AGC CCA CCAAACA CCG CGGCUGA AA \
CCCA UUG GGU GGUUUGU GGC GUCGGCU UU C
UGUAUAUAUCAUCUUAGAC CC^ - - U- CA G CCACUCU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ax |
Ce |
Fr |
He |
In |
Op |
Op |
Pe |
Po |
Re |
Sk |
St |
Su |
Su |
Te |
Ve |
Vi |
Wh |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Ovu-Mir-12500-v3_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAAACACCCCGCCGGCUGAAAA -22
Get sequence
|
|---|
| Mature sequence |
Ovu-Mir-12500-v3_3p |
| mirBase accession | None |
|---|
| Sequence |
39- GUCGGCUGACCGGUUGUUUGGU -61
Get sequence
|
|---|
