MirGeneDB 3.0

MirGeneDB ID

Ovu-Mir-12514

Family name MIR-12514 (all species)
Seed GCAAGAC
Species Common octopus (Octopus vulgaris)
MiRBase ID
Paralogues
Orthologues Esc-Mir-12514-v1  Esc-Mir-12514-v2  Obi-Mir-12514 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_003957725.1_ASM395772v1_OVU)
RXHP01019200.1: 72952-73009 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAGAAUCUGGCAUCUUGUUGAGAGUCACUGAGCAAGACAGACUUACUUUUGUGACUUUUAUCACCAAAGGGUUUCUGUGUUGUCCUCAGUUACCUCUCUCCUCCCAUCAUAUGUCUAU
Get precursor sequence
Structure
        10         20         30          40        50        
CAGAAUCUGGCAUCUUGUU-     UC-      --|  G     CUUA      UGACUU 
                    GAGAG   ACUGAG  CAA ACAGA    CUUUUG      \
                    CUCUC   UGACUC  GUU UGUCU    GGAAAC      U
UAUCUGUAUACUACCCUCCU     CAU      CU^  G     UUG-      CACUAU 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ax Ce Fr He In Op Op Pe Po Re Sk St Su Su Te Ve Vi Wh
Mature sequence

Ovu-Mir-12514_5p

mirBase accessionNone
Sequence
0- AGCAAGACAGACUUACUUUUGU -22
Get sequence
Star sequence

Ovu-Mir-12514_3p*

mirBase accessionNone
Sequence
34- CAAAGGGUUUCUGUGUUGUCCUCA -58
Get sequence